For some reason Calibre won’t let me do anything because “drive is full” which I assume has to do with this.
Update: I believe I “fixed” the error with Calibre by using FlatSeal to add environment variable CALIBRE_TEMP_DIR that changes the Temp directory to something else. So far that’s the only program I’ve seen give trouble.
Calibre installs fine (flatpak). I updated my post but I was able to change the temp directory which “fixed” it.